Is this something that just started, or has it been whining for a while? It sounds like something in the tranny is running dry. Is the oil level topped up? (Basic, but thought I'd ask). Intermittent problems are the worst ones to try to solve. Try changing to synthetic transmission lube if you aren't using it already, and see if it makes a difference. Eaton and Rockwell want synthetic exclusively in all their manual gearboxes now.
Whatever you do, don't let problems go too long with the synchro tranny- they can be expensive to rebuild, around $3-5K. (Yet are available used at any good truck scrapyard for under $1k.)
A lot of guys are swapping in 9 or 10 speed non-synchros in place of Eaton 6's or Spicer 7's. Better MPG and more power range with the less than exciting power of the CAT 3126. So if your tranny blows up Larry, I wouldn't worry too much. There are a lot of trannies that fit the 3126.
-Weave-